PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014205
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 600aa    MW: 66209.6 Da    PI: 4.5041
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014205genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.12e-1112386002374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++L+ecA+  s+++  +a ++L +l+e  s++gdpm+R+a yf+eAL  rl+      y+ l + e++   s++ + ++k++++++P+ kf+hltaNqa
  Cla014205 238 LKTLIECARL-SESEPDRAAQTLIKLKESLSEHGDPMERVAYYFLEALCWRLSL---PSYNRLVSCEST---SDDFTLSYKALNDACPYSKFAHLTANQA 330
                689******5.56678888889999***************************98...455555555555...7999************************ PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                Ile++++++++HiiDf+i+qG+QW+aLlqaLa+R+ g+p ++Ri g+ sp      +  +tg+rLa+fA+ l+++fef++ + + +e+l+++++r++++E
  Cla014205 331 ILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPtRIRISGIPSPM---LGNCPATGNRLAEFAKLLELNFEFDP-ILTPIEELNVSSFRIDTDE 426
                ***********************************66666*********76...77899*********************.799**************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                +laVn++lql++llde+        +vL+l ksl+Pk+v++ e ea++n+  F++rf +al+yysa+f+sl+ klpr+s+er  +E+ +lgr+i  +v  
  Cla014205 427 TLAVNFMLQLYNLLDEPPRAVL---KVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGP 523
                **************99999988...9*************************************************************************9 PP

       GRAS 301 egae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                e +   ++ r+e +e+W++ +e++GF++v+ls++a +qak ll +++ s +y++ e+sg l l W++ p+++vS+Wr
  Cla014205 524 ESSPgaKTDRMEDKEEWKMLMENCGFESVNLSHYAKSQAKILLWNYDySSEYSLMESSGFLSLAWNEVPIITVSSWR 600
                9886669****************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.238211579IPR005202Transcription factor GRAS
PfamPF035146.9E-109238600IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MANMCADSGN LMAIAQQVMK QQQQQEEQQQ QHPQQLTGPC TFGLNPWSAS NHALSGAPDL  60
GFGLSGAGFS NPFQVQRVVD VGETSFQFPN LENHSPAFRF SDFDGGTAAE FDSDEWMESL  120
MVGGDSTDST NLPSGCDVWQ SNSDFAFYGA DPFVPCPSRF TIPCSSPSDH NRIIFPDPPK  180
SEPAVEPPLV SWTGIPPATP SVVVKDTQVP NPPLAILKSE DNGGSSSSTG TESTPLLLKT  240
LIECARLSES EPDRAAQTLI KLKESLSEHG DPMERVAYYF LEALCWRLSL PSYNRLVSCE  300
STSDDFTLSY KALNDACPYS KFAHLTANQA ILESTDNASK IHIIDFGITQ GVQWAALLQA  360
LATRSTGKPT RIRISGIPSP MLGNCPATGN RLAEFAKLLE LNFEFDPILT PIEELNVSSF  420
RIDTDETLAV NFMLQLYNLL DEPPRAVLKV LQLAKSLNPK IVTLGEYEAS LNRVGFFNRF  480
KNALRYYSAV FESLDPKLPR DSKERLQLEK LVLGRQIGGL VGPESSPGAK TDRMEDKEEW  540
KMLMENCGFE SVNLSHYAKS QAKILLWNYD YSSEYSLMES SGFLSLAWNE VPIITVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1382376004375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143507.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0A0KJ340.0A0A0A0KJ34_CUCSA; Chitin-inducible gibberellin-responsive protein
STRINGXP_004143507.10.0(Cucumis sativus)
STRINGXP_004170737.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein