PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014127
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 349aa    MW: 39794.9 Da    PI: 4.569
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014127genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-1957110356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Cla014127  57 KKRRLSVDQVKALEKTFEIENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                456899***********************************************9 PP
2HD-ZIP_I/II121.63.9e-3956138183
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                  ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y++lk++ ++L++ 
    Cla014127  56 EKKRRLSVDQVKALEKTFEIENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYESLKRSFDTLQQX 138
                  69******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-1941114IPR009057Homeodomain-like
SMARTSM003895.4E-1955116IPR001356Homeobox domain
PROSITE profilePS5007116.98956112IPR001356Homeobox domain
PfamPF000463.6E-1657110IPR001356Homeobox domain
CDDcd000862.30E-1757113No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2059118IPR009057Homeodomain-like
PRINTSPR000311.0E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.0E-592108IPR000047Helix-turn-helix motif
PfamPF021831.8E-9112137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKRHGSSDSL GALMSVCPTS DEQSPRNSHV YGREFQSMLD GLDEEGSIEE HCHVGEKKRR  60
LSVDQVKALE KTFEIENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGL  120
LKANYESLKR SFDTLQQXXX XXXXXXXXXX XXXXXXXXXX XQDNDALLKE IKELKSKLEE  180
EKTESNLSVK EEIFVSESDN LLIEQTTNHL PVDHVSLPVA SDHSDDFNYE SFRTVGADDG  240
DDQRVEVSLF PDFKDGSSDS DSSAILNEDN SPNAVVSSAA AGMLESHHQI MSSPASSLNC  300
FPFQKAAYNN AQQFVKIEEH NFFSGEETCN LFSDEQAPSM HWYCPDQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
2125130ESLKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143453.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6
TrEMBLA0A0A0KGQ30.0A0A0A0KGQ3_CUCSA; Uncharacterized protein
STRINGXP_004143453.10.0(Cucumis sativus)
STRINGXP_004173863.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-67homeobox protein 6