PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013954
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 483aa    MW: 54163 Da    PI: 6.2259
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013954genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.75.1e-97854672373
       GRAS   2 velLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshl 96 
                 +lL+++A+av  ++    la+ +L rl+el+sp+  ++++Rl+ay+++A +  l      +   +  +  ++++++ +++laa++l++++sP++kf+h+
  Cla013954  85 YHLLVAAADAVFGDHECrdLAHVILIRLNELVSPSHgTNLERLTAYYAQAFQDLLDCapLNKPHHHNHHLHRDHDHSPTDVLAAFQLLQDMSPYVKFGHF 184
                699********886655569***********777554****************99874222333333455555556699********************* PP

       GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR+   ++p+lRiT+v++ +sg  s  +++etg+rL  fA+++g pf+f+    ++ e+++++
  Cla013954 185 TANQAILEAVAEDRRVHIVDYDIMEGIQWASLMQALVSRKdsPSAPHLRITAVSRGASGrrSIATVQETGRRLVAFAASIGQPFSFHQCKLDSDESFRPS 284
                ****************************************544579*********999899999************************9999******** PP

       GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErel 289
                 L++ +gEal+Vn++l+l ++  ++ ++   + ++L+  k l+P++v++ve+e+ h+ +   ++  +fl++le ysa++dslea +p ++++r+ vEr++
  Cla013954 285 GLKLVRGEALVVNCMLHLPHFSYRTSES---IASFLSGAKILNPRIVTLVEEEIGHGPTidgDYKVQFLDSLERYSAIYDSLEAVIPMKNRARTLVERVF 381
                ********************98544443...559*********************9744444************************************** PP

       GRAS 290 lgreivnvvacegaerre..rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                lg++i+  +   g++rr    +e    W e+le++G+k++++s  + +qa+lll  ++ dgy+vee  ++ lvlgWk+++L+s+S W
  Cla013954 382 LGPRISATLRRIGQRRRStvTMEDNCLWGEQLEKMGLKAATISFANHCQARLLLGLFN-DGYKVEELgNNKLVLGWKSKRLFSASIW 467
                *************99876225677788*******************************.******98799999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.40458448IPR005202Transcription factor GRAS
PfamPF035141.8E-9485467IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MALAIDDPFN DIALSNYTTS TNNSDDHRHL AGHWNYGSPI VDWETFPGAD NDFHDLFDSM  60
ICIDNPPYPT EDREEEEEFK GLRLYHLLVA AADAVFGDHE CRDLAHVILI RLNELVSPSH  120
GTNLERLTAY YAQAFQDLLD CAPLNKPHHH NHHLHRDHDH SPTDVLAAFQ LLQDMSPYVK  180
FGHFTANQAI LEAVAEDRRV HIVDYDIMEG IQWASLMQAL VSRKDSPSAP HLRITAVSRG  240
ASGRRSIATV QETGRRLVAF AASIGQPFSF HQCKLDSDES FRPSGLKLVR GEALVVNCML  300
HLPHFSYRTS ESIASFLSGA KILNPRIVTL VEEEIGHGPT IDGDYKVQFL DSLERYSAIY  360
DSLEAVIPMK NRARTLVERV FLGPRISATL RRIGQRRRST VTMEDNCLWG EQLEKMGLKA  420
ATISFANHCQ ARLLLGLFND GYKVEELGNN KLVLGWKSKR LFSASIWVSP SSSSSSSSLS  480
DSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-51674682379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445682.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-180NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1S3BE540.0A0A1S3BE54_CUCME; nodulation-signaling pathway 2 protein
STRINGXP_008445682.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-141GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]