PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013808
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 421aa    MW: 44730.8 Da    PI: 6.8947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013808genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20222271255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Cla013808 222 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 271
                7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.6E-33222280IPR001471AP2/ERF domain
PROSITE profilePS5103225.712222279IPR001471AP2/ERF domain
PfamPF008473.7E-14222271IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22222280IPR016177DNA-binding domain
SMARTSM003802.3E-36222285IPR001471AP2/ERF domain
PRINTSPR003671.1E-11223234IPR001471AP2/ERF domain
CDDcd000183.00E-15230281No hitNo description
PRINTSPR003671.1E-11245261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MCSLKVANRR GIGSDLAQFP SGGAGDGDGD TGGGDDRHRL LYGQRDDGDY YSAVGEVSTI  60
VSTLTNVMSG QRAADWGYGG GQGFTTGFVS SSSSSSSSSS STSASASAPG SSPLSSYSSG  120
SERSYVPTMS YWVGQKRMRE EEISIQTQPD FDSVSMGFSF RGFDDHFSHS QGQSSSLVTT  180
SVKDEVPLPH TVVSNPAAAA AAFAATAMSS NDAVAAGERR RRYRGVRQRP WGKWAAEIRD  240
PHKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE NVRLIPPPQH IPAAASSAGP  300
QFAPPQTAAF QTQNYRDYLE YSNLLQNSGE LLGQPSSLLQ QMFYNAHLAP FQSSSSPVPP  360
TVTAPSMSSV SNSVFFPPSL PQQQMGVFRQ PPQTQNQGGS NSFPGTSWND SGGQYPSSSS  420
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22221282466ATERF1
3gcc_A2e-22221282466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141007.11e-159PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0A0KBA41e-157A0A0A0KBA4_CUCSA; Uncharacterized protein
STRINGXP_004141007.11e-158(Cucumis sativus)
STRINGXP_004165890.11e-158(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-17ethylene response factor 110