PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla013765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GATA | ||||||||
Protein Properties | Length: 317aa MW: 34300.3 Da PI: 5.6757 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.8 | 3.1e-18 | 223 | 256 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR gp g+ktLCnaCG++y++ + Cla013765 223 CLHCEVTKTPQWRAGPLGPKTLCNACGVRYKSGR 256 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.6E-76 | 1 | 311 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.358 | 217 | 253 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.6E-15 | 217 | 267 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.3E-14 | 221 | 255 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.71E-14 | 221 | 280 | No hit | No description |
CDD | cd00202 | 3.07E-15 | 222 | 279 | No hit | No description |
Pfam | PF00320 | 6.0E-16 | 223 | 256 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 223 | 248 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MIGENIADEI DCGNFFDHID DLLDFPTEDL DDAVFTTNAA AFPPIWSAHS DSLPPAVVDP 60 VFSADTGDSG LSAELPAPYD DMVQLEWLSN FVDDSFSGAG NLTINTSSLS PSNQFHTSSP 120 VSVLDSSSSS SSSSSSSDEK KALPTAAGRR VRARSKRPRP PSFIPRPPQL ISPTNSGGKV 180 SSESENYAES CSPPPPAKKT KKIKLSFRRD QNDAFNPQGV RKCLHCEVTK TPQWRAGPLG 240 PKTLCNACGV RYKSGRLYPE YRPAASPTFV PCLHSNSHKK VLEMRIKQVE RGAESTMEES 300 PPELIPNTNS GIILGYV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 159 | KRPRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149904.1 | 1e-158 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A0A0KDP1 | 1e-157 | A0A0A0KDP1_CUCSA; GATA transcription factor | ||||
STRING | XP_004149904.1 | 1e-158 | (Cucumis sativus) | ||||
STRING | XP_004158598.1 | 1e-158 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-42 | GATA family protein |