PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013573
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 387aa    MW: 44430.8 Da    PI: 4.5463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013573genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19179229256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r r +lg+f+tae+Aa a+++ + kl+ge
  Cla013573 179 LYRGVRQRH-WGKWVAEIRLPRN---RNRLWLGTFDTAEDAALAYDREAFKLRGE 229
                59******9.**********965...48*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.61E-34178238No hitNo description
SMARTSM003801.2E-39179242IPR001471AP2/ERF domain
PROSITE profilePS5103222.893179236IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22179237IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-32179237IPR001471AP2/ERF domain
PRINTSPR003671.6E-10180191IPR001471AP2/ERF domain
PfamPF008473.9E-12180229IPR001471AP2/ERF domain
PRINTSPR003671.6E-10202218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDEHKHTDHN EFQGWSFPRQ QGKPVPISPR PFKKIRDPEN HNPTQPLDSI SHHSFPFLNP  60
PSSLSQASSP SSTRTTLFPF ALEPSQFPHQ FKTDPVAPTL HHRPPVLPPH NQQQQLAPLA  120
STQLGFGYPP YFMGEFATFQ QQQQQQQHQQ FLQYWNESLD LNSRAGFRPQ VRPLNATKLY  180
RGVRQRHWGK WVAEIRLPRN RNRLWLGTFD TAEDAALAYD REAFKLRGEN ARLNFPELFL  240
NKDKEEEEEE EEEEEEEEAS QTSGPQQELD NNNVDNDIEL ESNNEAVAEE NIQEEEEGIS  300
KSQEMVWREM AEAWLNAMPA GWGPGSPVWD DLDTTNNLLL QPQLTFANSI QQESIGSDLH  360
SQPLNLTSAS PSSSSCPMKP FFLKDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21178236160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21178236463ATERF1
3gcc_A6e-21178236463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022970714.11e-179ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1S3BJM01e-165A0A1S3BJM0_CUCME; ethylene-responsive transcription factor ERF054-like
STRINGXP_008448413.11e-166(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-47ERF family protein