PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013512

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ERF

Protein Properties

Length: 219aa MW: 24316.3 Da PI: 7.8644

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013512	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65	1.6e-20	30	80	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f++aeeAa+a+++a+++l+g+ Cla013512 30 RYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSAEEAARAYDNAARSLRGA 80 59*****.******883....5***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.3E-32	30	88	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-35	30	93	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.459	30	87	IPR001471	AP2/ERF domain
Pfam	PF00847	3.0E-13	30	79	IPR001471	AP2/ERF domain
CDD	cd00018	1.23E-32	30	87	No hit	No description
SuperFamily	SSF54171	2.09E-22	30	88	IPR016177	DNA-binding domain
PRINTS	PR00367	3.8E-11	31	42	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-11	53	69	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MRRGRPSDPF TPTEIPKSTI QTENPLKEIR YRGVRKRPWG RYAAEIRDPW KKTRVWLGTF 60 DSAEEAARAY DNAARSLRGA KAKTNFPLHP STISIQQQIP FYQSPPDLHD SNGFGGKIEC 120 VQANRPTSSS LSSTVESFSG PRISNPLSSL SMVRRRPVQP VSPDDCHSDC DSSSSVVDDD 180 EVCVLASFRR ALPFDLNLPP PMDLVDLTGD DLQATALCL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-21	30	87	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00194	DAP	Transfer from AT1G50640	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	0.0	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143195.1	1e-136	PREDICTED: ethylene-responsive transcription factor 3-like
Refseq	XP_008456400.1	1e-136	PREDICTED: ethylene-responsive transcription factor 3-like
Swissprot	O80339	1e-40	ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBL	A0A0A0KBH0	1e-134	A0A0A0KBH0_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3C351	1e-134	A0A1S3C351_CUCME; ethylene-responsive transcription factor 3-like
STRING	XP_008456400.1	1e-135	(Cucumis melo)
STRING	XP_004143195.1	1e-135	(Cucumis sativus)
STRING	XP_004172004.1	1e-135	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2263	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15210.1	4e-28	ethylene responsive element binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]