PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013475

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 326aa MW: 37646.7 Da PI: 5.9326

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013475	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.5	1.3e-49	27	154	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 pGfrFhPtdeelv++yL++kv++k+l++ e ik++diyk++PwdLp++ ++ +ekewyfF+kr +ky+++ r+nr+t g+Wkatg dk+++ + ++ + Cla013475 27 PGFRFHPTDEELVNFYLRRKVHNKPLPI-ELIKQIDIYKYNPWDLPHASNGslGEKEWYFFCKRGRKYKNSVRPNRVTGCGFWKATGIDKPIYINdRSIV 125 9*************************.89***********5333334899*********************************9867778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vglkktLv+y+g+a kg+kt+W+m+e+rl Cla013475 126 VGLKKTLVYYRGSAGKGTKTEWMMNEFRL 154 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.139	25	188	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-54	25	188	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	27	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MTNSSSQFPD MAAVDNDGDD DSQFPLPGFR FHPTDEELVN FYLRRKVHNK PLPIELIKQI 60 DIYKYNPWDL PHASNGSLGE KEWYFFCKRG RKYKNSVRPN RVTGCGFWKA TGIDKPIYIN 120 DRSIVVGLKK TLVYYRGSAG KGTKTEWMMN EFRLPSSSSS SSDPFRRNII TNNLHEAEIW 180 TLCRIFKRNI SAKKAINAPW REVPSAKSRT VENMNFRATT NIDINRYFDD DEQSSYITFT 240 SNNSFINFDH VNDTQNFDQS QMSHTDRFMT NFCNSTDLPP STDHNSSANV SPSSSSFSDF 300 DEDATDLFGY EKWEELKSIL ECDFDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	16	194	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	16	194	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	16	194	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	16	194	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	16	194	10	174	NAC domain-containing protein 19
3swm_B	1e-47	16	194	10	174	NAC domain-containing protein 19
3swm_C	1e-47	16	194	10	174	NAC domain-containing protein 19
3swm_D	1e-47	16	194	10	174	NAC domain-containing protein 19
3swp_A	1e-47	16	194	10	174	NAC domain-containing protein 19
3swp_B	1e-47	16	194	10	174	NAC domain-containing protein 19
3swp_C	1e-47	16	194	10	174	NAC domain-containing protein 19
3swp_D	1e-47	16	194	10	174	NAC domain-containing protein 19
4dul_A	1e-47	16	194	7	171	NAC domain-containing protein 19
4dul_B	1e-47	16	194	7	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456334.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-79	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1S3C327	0.0	A0A1S3C327_CUCME; transcription factor JUNGBRUNNEN 1-like
STRING	XP_008456334.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	9e-78	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]