PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013402
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 454aa    MW: 49833.1 Da    PI: 8.2873
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013402genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-32169226260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +Dg+nWrKYGqK+vkgse+prsYY+Ct+++Cpv+k+vers  +++++ei+Y+++Hnh+k
  Cla013402 169 EDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSL-NGQITEIVYKSKHNHPK 226
                7****************************************.***************85 PP
2WRKY99.12.8e-31328386159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy WrKYGqK+vkg+ +prsYY+Ct+agC v+k++er+++d ++v++tYeg+Hnhe
  Cla013402 328 LDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHE 386
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-28163227IPR003657WRKY domain
SMARTSM007742.2E-36168226IPR003657WRKY domain
SuperFamilySSF1182904.32E-25168227IPR003657WRKY domain
PROSITE profilePS5081124.202169227IPR003657WRKY domain
PfamPF031062.1E-25169225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-33313388IPR003657WRKY domain
SuperFamilySSF1182903.4E-27320388IPR003657WRKY domain
PROSITE profilePS5081134.911323388IPR003657WRKY domain
SMARTSM007741.2E-34328387IPR003657WRKY domain
PfamPF031061.9E-23329386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MVMEFLFSSN SVEDPSGGPT FGHRRLPEHV AAAMSKPPLL PPLSPPLYSP SSFFTIPPGI  60
SPTQFLHSPL LLNSPHILPS PSTGAISAGD LTGTSNNSGH HQQNIKQEHN NFTELSFPRT  120
HHTTRSSSSS MFQPSSTVQS QRWGCEAAMN GGSEAEQRAE WELRKRGTED GFNWRKYGQK  180
VVKGSENPRS YYKCTYPNCP VRKQVERSLN GQITEIVYKS KHNHPKPDFT RRSSSSFSSS  240
SSSSSSSLLS EALPAAMAAE PKNSIASDSL TTPEDSSITI GDDDDDSHGA DAKRWKSESE  300
KEIMSSVGGK TVREQRVVVQ TISNVDKLDD GYWWRKYGQK VVKGNSNPRS YYKCTYAGCG  360
VRKHIERASH DIRAVITTYE GKHNHEVPVA RGSGGGRPIL ISSEGSNNDV ASNGGGNRRP  420
SSEICSGNNG LWELTNMVWR SKEEAVDDIF MGCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-32169388877Probable WRKY transcription factor 4
2lex_A5e-32169388877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840304e-80GU984030.1 Cucumis sativus WRKY protein (WRKY38) mRNA, complete cds.
GenBankLN6819224e-80LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132654e-80LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023007168.10.0WRKY transcription factor WRKY24-like isoform X2
SwissprotQ6B6R41e-100WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0A0KCF61e-164A0A0A0KCF6_CUCSA; Uncharacterized protein
STRINGcassava4.1_004465m1e-117(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-80WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]