PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013366
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 677aa    MW: 73863.9 Da    PI: 6.3011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013366genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07260280526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ GtC+ Gd C +aHg
  Cla013366 260 PCPEFRK-GTCRQGDACEYAHG 280
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.73E-1356134IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.12259134IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-659126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00765989IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.2E-1560134IPR020683Ankyrin repeat-containing domain
CDDcd002044.81E-1261158No hitNo description
PROSITE profilePS5008811.62194129IPR002110Ankyrin repeat
SMARTSM002480.2194126IPR002110Ankyrin repeat
SMARTSM003565.4E-5255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784260282IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4260280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4288318IPR000571Zinc finger, CCCH-type
SMARTSM0035630290313IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.103290314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:1.25.40.201.2E-15620645IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MDDRFRRGGL GFCISVLLEF SATDDLIGFR SAVEEGGYNI DEASLWYGRI FGSKKMGYEE  60
RTPLMVAAMF GSMNVLSYIL HSGRVDVNRA CGSDGATTLH CAVAGGSAVA DQVVKLLIDA  120
SADVSAVDAN GNRPGDLIAP DFTSASYSRK KVLQQLLNDR EEALGSSESI FYERETQEPL  180
ELSPPRASRD GTEKKEYPVD LSLPDIKNGI YSTDEFRMYT FKIKPCTRAY SHDWTECPFV  240
HPGENARRRD PRKYHYSCVP CPEFRKGTCR QGDACEYAHG IFECWLHPAQ YRTRLCKDET  300
GCTRKVCFFA HKPEELRPLY ASTGSAVLSP RSICGSSLDI ASISPLTLGS PSALIPPSST  360
PPLTPSGVSS PMSGTMWQTQ CNMAPPTLQL PGSRLKASLS ARDIDIDVEL LGLESQRRRQ  420
QQLMDEMSCL PSPTRWNNGL PTPPSFPSPR SRNGELNGLG GMNPNNLEDL FGSVDPAILP  480
QLQGLSLDSV GSQVQSPSGI QMRQSLNQSF LSSYANSIGS PPARSSQPSV STAASVLSSR  540
AAAFAKRSQS FIERSVVNRH SGLSPPATST TAMPSSLSDW GSPDGKLDWG IRGEELNKLR  600
KSASFGFRNS CTSTLATSTM HAATLEPDVS WVQSLVKDGP SENAVQLSMD EQQQQQLCHL  660
DNGDSKRRYM EQEQLVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464034.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1S3CL130.0A0A1S3CL13_CUCME; zinc finger CCCH domain-containing protein 66
STRINGXP_008464034.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein