PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013063
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 277aa    MW: 30612.8 Da    PI: 7.0193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013063genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-20145193355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr+++ +g+W+AeIr p     +  +r++lg+f taeeAa+a+++a+++++g
  Cla013063 145 YRGVRQRP-WGKWAAEIRNP-----KlaTRVWLGTFNTAEEAARAYDKAALEFRG 193
                9*******.**********9.....557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.843144201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32144201IPR001471AP2/ERF domain
SMARTSM003803.6E-38144207IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22144202IPR016177DNA-binding domain
PfamPF008471.2E-14145193IPR001471AP2/ERF domain
CDDcd000187.31E-34145201No hitNo description
PRINTSPR003672.5E-12145156IPR001471AP2/ERF domain
PRINTSPR003672.5E-12167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNSLKRSRST ESPESYHFSL PPPYFRPISS DQELSVIVTA LTSVVSGTSS HFHYSMADRF  60
WRQNQIPPPS AFDSSASDSF SASATTSSIS CSSTDAIFSP SVFETCTVCR IDGCLGCNFF  120
PPSSSSSSQV DGHKKSANKR SKKTYRGVRQ RPWGKWAAEI RNPKLATRVW LGTFNTAEEA  180
ARAYDKAALE FRGPRAKLNF PFTDDSLRMM SSEQQQQRPE NEISRNGSNS AAIGIGNEDE  240
LWGKIAKDEM DQWMSAFMTD HGGDSSDSAS IGTWEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22143202161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456122.11e-164PREDICTED: ethylene-responsive transcription factor ERF109
SwissprotQ9SZ062e-33EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1S3C3R91e-162A0A1S3C3R9_CUCME; ethylene-responsive transcription factor ERF109
STRINGXP_008456122.11e-163(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-28redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]