PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012658
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 322aa    MW: 35095 Da    PI: 6.1779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012658genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.1e-17219253135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Cla012658 219 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 253
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-7314298IPR016679Transcription factor, GATA, plant
SMARTSM004011.0E-15213263IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44213249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.0E-14213251IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-14215277No hitNo description
CDDcd002021.94E-12218265No hitNo description
PfamPF003207.7E-15219253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEVPEYLVGG YYSTGAGQFS PEKQKSAAEH FAVDEYLLDF SNEDVAMHSG FFDNVAGNCS  60
DSSTVTAIES CNSSVSGGDN QLLGKFGSGS FCEAQFSSEL CIPCDDLAEL EWLSNFVEES  120
FSTEEIEKDF KAIPFLPGGI STAATPETPS SSGANAFGYG SAKTTSFIHS EALTLPGKAR  180
SKRSRASPCD WSTRLLQATA PEKTEGMMAK SETTSGRKCL HCAAEKTPQW RTGPMGPKTL  240
CNACGVRYKS GRLVPEYRPA SSPTFVSTKH SNSHRKVMEL RRQKEMQHQE QFVSPSSIFS  300
RSNGCNEYLI HRHNGGDFSH MM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447537.10.0PREDICTED: GATA transcription factor 4-like
TrEMBLA0A1S3BI990.0A0A1S3BI99_CUCME; GATA transcription factor
STRINGXP_004172012.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-70GATA transcription factor 9