PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012595
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 277aa    MW: 30551.7 Da    PI: 9.8732
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012595genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.7e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE++ l+ +v+++G+g Wk I +        ++R+  ++k++w+++
        Cla012595  5 KQKWTSEEEDALLAGVNKHGPGKWKNILKDPDfapslTHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.374161IPR017930Myb domain
SuperFamilySSF466897.9E-16259IPR009057Homeodomain-like
SMARTSM007172.7E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-15456IPR009057Homeodomain-like
PfamPF002495.0E-9556IPR001005SANT/Myb domain
CDDcd116603.83E-21656No hitNo description
SuperFamilySSF467853.05E-15110192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005265.4E-14111176IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.2E-13112183IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.375113181IPR005818Linker histone H1/H5, domain H15
PfamPF005385.5E-10115174IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGNQKQKWTS EEEDALLAGV NKHGPGKWKN ILKDPDFAPS LTHRSNIDLK DKWRNLSVST  60
ASQGSKEKSR IPKAKAIVAA ISNNQSSAPA KLIAAADTAG DDTPNNSTQD GKNVPRYYSM  120
IFEALSTIKD SNGCDIGTIV NFIEQRHEVP QNFRRQLSSK LRRLVSQGKL EKVQNCYKVK  180
KDNSLAVKTP TPKQKDVRQR ISQQTMGAVM PSGETVEDAA KAAAYKVADA ENKSFLAAEA  240
VKEAERIAKM AEDTDSMLQI IKEMYEKCSR GEIILLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818271e-109LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132581e-109LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146812.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L13e-82TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A0A0LDD10.0A0A0A0LDD1_CUCSA; Uncharacterized protein
STRINGXP_004146812.10.0(Cucumis sativus)
STRINGXP_004154792.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-77MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]