PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla012226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | YABBY | ||||||||
Protein Properties | Length: 169aa MW: 18820.6 Da PI: 8.1249 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 131.7 | 9.3e-41 | 68 | 143 | 96 | 170 |
YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++s+k++ ++ + v+rPPekrqrvPsayn+fikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl Cla012226 68 NNSNKMEIRAPTTIAAEERvVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGL 143 444555555555554444449*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.7E-39 | 64 | 143 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.5E-8 | 84 | 136 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.3E-4 | 91 | 137 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MAASCIDIAP EQLCYIPCNF CNIVLASDVG TAQICGPSIW LLPFSLFLGK IFSGGDFQGD 60 FGSSSKCNNS NKMEIRAPTT IAAEERVVNR PPEKRQRVPS AYNQFIKEEI QRIKASNPEI 120 SHREAFSTAA KNWAHFPRIH FGLMLETNNQ VKLDDGSERL MTRAALLNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150030.1 | 8e-90 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 3e-55 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S4DUX7 | 1e-73 | A0A1S4DUX7_CUCME; axial regulator YABBY 5-like | ||||
STRING | XP_004150030.1 | 3e-89 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-53 | YABBY family protein |
Publications ? help Back to Top | |||
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