PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla011510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28733.7 Da PI: 7.0045 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 79 | 129 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ + +++Lr+llP ++K s + ++v+YI+++q Cla011510 79 IIHRDVERQRRQEMSTLYSTLRSLLPLeY---LKGKRSICDHMHETVKYIQHMQ 129 5699***********************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-13 | 74 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.50E-9 | 75 | 133 | No hit | No description |
PROSITE profile | PS50888 | 13.173 | 76 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 80 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 80 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-5 | 82 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MELECIEFPF PFDQADELFP LPSLTPIDLS VSQPPLICSK NKNDKNASEK PKNNRRRKSP 60 NTSDDIEDEN PNEHKKKKII HRDVERQRRQ EMSTLYSTLR SLLPLEYLKG KRSICDHMHE 120 TVKYIQHMQS KIQKLTNKRD ELKKDIEDDS NISTIETLNS SKRDCVVVKP RSGGFQILLD 180 TATQHRLPLS NLLKFLLTER LEIISCHSTK INDRFLHTIE SEAIDIGTID VSELQHKLTN 240 LEYFPLD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 77 | RRKSPNTSDDIEDENPNEHKKKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295841.1 | 1e-137 | transcription factor bHLH118-like | ||||
TrEMBL | A0A0A0KMQ4 | 1e-136 | A0A0A0KMQ4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004164316.1 | 1e-136 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 5e-38 | bHLH family protein |