PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011237
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 382aa    MW: 42250.3 Da    PI: 7.1113
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011237genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08139159526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ G Ck Gd+C FaHg
  Cla011237 139 ACPDFRK-GSCKKGDSCEFAHG 159
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0886123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-5133163IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6138161IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.066169193IPR000571Zinc finger, CCCH-type
SMARTSM0035610169192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MIISERHRPG PVVHITPLTI PEEPPASETR FAFPLSGISV SSDGNANGGD YSPYYLQEAL  60
AALQRYTNES EIESDSELSG RESDVPVDAY SCDHFRIFEF KVRKCTRGRS HDWTECPYAH  120
PGEKARRRDP RKYHYSGTAC PDFRKGSCKK GDSCEFAHGV FECWLHPTRY RTQPCKDGTN  180
CRRRVCFFAH TPEQLRVLPQ QSPRSANSPE SYDESPLRQS LDGSCAKSLP FLSSPVSVSP  240
TATPVDSPPL SPMTRSLGRS LGSSSINEMV ASLRNLHLSK VKSLPSSWNV QIGSPGYPSR  300
VCHGFCSLPT TPTRAPTGHG VGLLDFSEHG FEEEPAMERV ESGRELRAKM LEKLSKENSL  360
DLADSNPSAC TPDVGWVSEL VK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135688.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-126C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S3BQ410.0A0A1S3BQ41_CUCME; zinc finger CCCH domain-containing protein 49-like
STRINGXP_004135688.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-122C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]