PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011222
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HRT-like
Protein Properties Length: 460aa    MW: 51441.7 Da    PI: 9.996
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011222genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like474.2e-15261290231
   HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                CGv  + G vC+++PvkgRKRC eHKGm+i
  Cla011222 261 CGVVEGYGVVCRKPPVKGRKRCSEHKGMKI 290
                ****************************97 PP
2HRT-like64.21.8e-20335365131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                iCGv l dGs+C+r+Pv+gRKRCeeHKG+Ri
  Cla011222 335 ICGVVLYDGSPCRRSPVEGRKRCEEHKGQRI 365
                8*****************************7 PP
3HRT-like469.1e-15408438131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                +C v l++G  C+rqPvkgR RC eHKGmR+
  Cla011222 408 MCCVDLGNGLYCTRQPVKGRVRCGEHKGMRT 438
                699***************************5 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MRLKREDCKR TKHDSNFSKW EILVAPSDWE DYSLGKEGAE RYRIHNLPKV SSPGLYELGI  60
AVSSSGLGRD IAKLDADWIV VIYLGEADNV RTRLQHYGRS GSHLGNGYLC VVDCKVVPLE  120
KGPGLFQEMF SRGYSIVYRW APMKNKRDAQ MTEAQLLKTF DYAWNTSGNG ARRHNDVLKK  180
LEDIASQTTK FTIISRKLLP FRQKQMGIKI KTSKPIPTVN KPAEYAEEKN SFFSRILNFS  240
RSRPRLVVDT EDVNEADSNS CGVVEGYGVV CRKPPVKGRK RCSEHKGMKI NGLLKNSSGI  300
YGNKDFSGSN TETSNDTEER SVSDSFPNKG TFLPICGVVL YDGSPCRRSP VEGRKRCEEH  360
KGQRIRRSTL LNHAALKFKQ TSPISKPESL LIAQGNSSEL SSSGLERMCC VDLGNGLYCT  420
RQPVKGRVRC GEHKGMRTNR LILRLATSIK PDMSDAGSAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-171LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-171LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023516214.10.0protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
RefseqXP_023516215.10.0protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
TrEMBLA0A1S3BPJ70.0A0A1S3BPJ7_CUCME; protein EFFECTOR OF TRANSCRIPTION 2
STRINGXP_008450835.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-104effector of transcription2