PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla011058 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 367aa MW: 42055.4 Da PI: 8.8546 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.4e-50 | 22 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 + pGfrF+Ptdeel+++yLkkk+eg + ++ evi+e++iyk+ePwdLp k++ ++e+ew+fFs+r kky++g++++rat+ gyWkatgk+++v+s ++++ Cla011058 22 MFPGFRFSPTDEELISFYLKKKLEGYEKSV-EVIAEIEIYKYEPWDLPaKSIIQSENEWFFFSPRGKKYPNGNQTRRATDLGYWKATGKERNVKS-GSNT 119 579************************999.99***************667777899**************************************.99** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+k+tLvf++grapkge+t+W+mhey+ Cla011058 120 IGTKRTLVFHTGRAPKGERTEWIMHEYNT 148 ***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-55 | 13 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.643 | 22 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-25 | 24 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MAAASENGVS REVQLSMAVS SMFPGFRFSP TDEELISFYL KKKLEGYEKS VEVIAEIEIY 60 KYEPWDLPAK SIIQSENEWF FFSPRGKKYP NGNQTRRATD LGYWKATGKE RNVKSGSNTI 120 GTKRTLVFHT GRAPKGERTE WIMHEYNTKD KAQDFLVVCR LRRNNEFRQH SCSNRASSSR 180 MNLSSLQAHS SEQVDSTSES NQKDAAETAL VESSGDHDQK DYGSDDFYSD ILKDDIINLD 240 TVPFGAASDP LPLIFHRSDT ERRSQHEAND VFEWLPNQGS ANRRIRLKRR EGIGGKKLES 300 MRIGDYRNKV EKERFCSTEV CQSRVMNSAS CVRIVRGYVR VVIFVLLILM ALFMSRWEVF 360 GIPKGLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-45 | 21 | 169 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-45 | 21 | 169 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-45 | 21 | 169 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-45 | 21 | 169 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-45 | 21 | 169 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-45 | 21 | 169 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-45 | 21 | 169 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-45 | 21 | 169 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-45 | 21 | 169 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-45 | 21 | 169 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-45 | 21 | 169 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-45 | 21 | 169 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-45 | 21 | 169 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-45 | 21 | 169 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 282 | 290 | RRIRLKRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681929 | 1e-137 | LN681929.1 Cucumis melo genomic scaffold, anchoredscaffold00080. | |||
GenBank | LN713266 | 1e-137 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463642.1 | 0.0 | PREDICTED: NAC domain-containing protein 89-like isoform X2 | ||||
Swissprot | Q9XIN7 | 2e-86 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | A0A1S3CJQ8 | 0.0 | A0A1S3CJQ8_CUCME; NAC domain-containing protein 89-like isoform X2 | ||||
STRING | XP_004139589.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7315 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 7e-89 | NTM1-like 8 |
Publications ? help Back to Top | |||
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