PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010918
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 361aa    MW: 40510.4 Da    PI: 6.0118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010918genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.5e-29131191259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK++ g+++prsYYrCt++   +C++ k+v+rs+edp+v+eitY+g+H+++
  Cla010918 131 EDGYSWRKYGQKDILGATYPRSYYRCTFRntqNCWAIKQVQRSDEDPSVFEITYRGKHTCS 191
                8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28122192IPR003657WRKY domain
SuperFamilySSF1182902.62E-25129192IPR003657WRKY domain
SMARTSM007742.1E-39130192IPR003657WRKY domain
PROSITE profilePS5081121.918131188IPR003657WRKY domain
PfamPF031062.8E-26131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESGWSWDQK SLIGELIQGL ELTKRLRAEL SSASAEESRG SLVQGILSSY EKALLILKWN  60
GPMNQPQMVE ATPGLPGSPI SVNGSPSSDD SGRGLKDPQD PRKESKKRKT QPRWTEQVKV  120
NSETGFEGPH EDGYSWRKYG QKDILGATYP RSYYRCTFRN TQNCWAIKQV QRSDEDPSVF  180
EITYRGKHTC SQGNYLAQSC HSPDKQEKKE NDHDHGHNHD HHQLQPSQEN LFSNQTIENI  240
EKLENKASTF CFGSSSTSVG CKDIVNGGFS HLAIDTHAAL GSFTQSFISP TTPDSNYFTP  300
SPCQRSNIGE THNVQHPEPD VHEIFSANTS ATNSPILDWD FPFDSEQINP NFPFNSQGFF  360
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-17131190968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108PRKESKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-168LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-168LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451934.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S3BSQ20.0A0A1S3BSQ2_CUCME; probable WRKY transcription factor 41
STRINGXP_008451934.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-59WRKY family protein