PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010813
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28655.7 Da    PI: 8.6037
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010813genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25.1e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+ rqvtfskRr+g+lKKA+E+SvLC+a+va+i+fs++gkl+eyss
  Cla010813  9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSS 59
               79***********************************************96 PP
2K-box103.13.7e-349017515100
      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 s++qe+ kL +++e +q+++Rh+lGe+L++L+l+eLq+LeqqL++slk+iRs+Kn+l+ e+i++l kke+elqeen++L +k++e
  Cla010813  90 VSWCQEYPKLAARLEIIQKNLRHYLGEELDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISTLHKKERELQEENRQLANKVKE 175
                58*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-32280IPR002100Transcription factor, MADS-box
CDDcd002653.45E-40276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129717.18989179IPR002487Transcription factor, K-box
PfamPF014868.6E-2991173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCE ADVALIVFST KGKLFEYSSD  60
SSMEKILEKY ERYCYAEKPL APNGDPELQV SWCQEYPKLA ARLEIIQKNL RHYLGEELDP  120
LNLRELQSLE QQLDTSLKRI RSRKNQLMQE SISTLHKKER ELQEENRQLA NKVKENEKGL  180
VERGQCDDLP NLVRNQPIFA MPSPIIPSLS IGVNLHGRGS DEDETRATSV NNIQIPAWML  240
SHVTENPHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21173172MEF2C
5f28_B4e-21173172MEF2C
5f28_C4e-21173172MEF2C
5f28_D4e-21173172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818682e-74LN681868.1 Cucumis melo genomic scaffold, anchoredscaffold00090.
GenBankLN7132612e-74LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137262.11e-157PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
SwissprotD7SMN66e-94FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A0A0KW391e-107A0A0A0KW39_CUCSA; Uncharacterized protein
STRINGXP_004137262.11e-157(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.14e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]