PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010176

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 353aa MW: 37417.4 Da PI: 9.7333

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010176	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.9	1.2e-40	60	221	2	125
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Cla010176 60 PPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTISAPshlrtsyfsptq 159 789******************************************************************9998777777777755555666666776543 PP TCP 89 .......kaaksaakskksqksaasalnlakesr...........................akarararer 125 + ++++++++nl ++s+ +k r+++ e+ Cla010176 160 favrtrsD---------LWDRNNNHNHNLVDDSStflnfnapnyvnvfkqdqggidvteagKKRRSEQSES 221 33222220.........223333333444444444444444444555555556666655544444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-39	65	185	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.923	66	120	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDGENGIRRP NFPLQLLEKK KEEQQQPCSS SANNGGTTTT TITTTPNPNL QSSSSPKKPP 60 PKRATTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAVIAA 120 TGTGTIPANF TSLNISLRSS GSTISAPSHL RTSYFSPTQF AVRTRSDLWD RNNNHNHNLV 180 DDSSTFLNFN APNYVNVFKQ DQGGIDVTEA GKKRRSEQSE SSSDNYLVQT STGSIPASQS 240 SPLPATFWMV TNPSNQGSDP MWTFPSVGNS SMLRGAGAGG GGGGGGGGFH FMNLPPPMAL 300 LPSGQQLGTG IGSGGGPATE SHLGMLAALS AYRTTMPGLS VSESPTSNNP DQS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDGENGIRRP NFPLQLLEKK KEEQQQPCSS SANNGGTTTT TITTTPNPNL QSSSSPKKPP  60
PKRATTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAVIAA  120
TGTGTIPANF TSLNISLRSS GSTISAPSHL RTSYFSPTQF AVRTRSDLWD RNNNHNHNLV  180
DDSSTFLNFN APNYVNVFKQ DQGGIDVTEA GKKRRSEQSE SSSDNYLVQT STGSIPASQS  240
SPLPATFWMV TNPSNQGSDP MWTFPSVGNS SMLRGAGAGG GGGGGGGGFH FMNLPPPMAL  300
LPSGQQLGTG IGSGGGPATE SHLGMLAALS AYRTTMPGLS VSESPTSNNP DQS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446337.1	0.0	PREDICTED: transcription factor TCP15
TrEMBL	A0A1S3BFM6	0.0	A0A1S3BFM6_CUCME; transcription factor TCP15
STRING	XP_008446337.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-48	TCP family protein