PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009758 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28475.9 Da PI: 8.0444 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.8 | 6.7e-19 | 24 | 72 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i n+ r +tfskRr gi KKA+EL +LC+aev v++fs+ gk + + Cla009758 24 KKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72 6789999*************************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.306 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.3E-29 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.42E-31 | 17 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-25 | 17 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-19 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-23 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-19 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-19 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDSAAPAVAG NKKQTKGRQK IEMKKIVNED DRLITFSKRR SGIYKKASEL ATLCGAEVGV 60 VVFSPAGKPF SFAHPCIESV ANKFLNDDKN KNNNSKENNN NNTNNATHPL VEAHRRVRIN 120 ELNQQHNQLL SQLDAEKEKG KALEKLKKVR GNGRGWWETP AEELGIEELQ EVDASLGELY 180 QNVCHQLKQR GVIGSCSYNN YNDNPSMGFT NEFGEETIPF NILGNVPPPF LPPPYLPPHP 240 HFDFGGQHQH HHHP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-101 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-101 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658286.1 | 1e-116 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A0A0KNT7 | 1e-114 | A0A0A0KNT7_CUCSA; Uncharacterized protein | ||||
STRING | XP_008439651.1 | 1e-121 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-29 | AGAMOUS-like 61 |