PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009635 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27276.6 Da PI: 9.7386 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAa+a+++a+++++g Cla009635 21 HFRGVRKRP-WGRYAAEIRDPCK---KSRVWLGTFDTAEEAARAYDNAAREFRG 70 69*******.**********854...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.58E-22 | 21 | 79 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.04E-30 | 21 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 21 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.472 | 21 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-13 | 21 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-39 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAPREKAVAV KPNVGNVKEV HFRGVRKRPW GRYAAEIRDP CKKSRVWLGT FDTAEEAARA 60 YDNAAREFRG VKAKTNFPLP SDDQLLNLNN KINNINNNQS PSQSSTVESS SREQALMVDS 120 SPLNLNLGHG IGGLTTAGPI SFPFQRYQIP VIGEVFTRGI PQSNHVLYFD AALRAGMIKS 180 HPRHPHQQLR FDHLREAMSD FRREFASGGV QSDSDSSSVV DMNGQDLKPR GGGGLDLDLN 240 FPPPETA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 17 | 79 | 1 | 64 | ATERF1 |
3gcc_A | 2e-21 | 17 | 79 | 1 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439819.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A1S3B0A2 | 1e-129 | A0A1S3B0A2_CUCME; ethylene-responsive transcription factor 4-like | ||||
STRING | XP_008439819.1 | 1e-129 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 7e-27 | erf domain protein 9 |