PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009634
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 729aa    MW: 80049.3 Da    PI: 7.9031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009634genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07191212426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+f+a+ G+C  G++C+F H+
  Cla009634 191 AICDFYAK-GWCIKGSSCSFLHV 212
                68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.357188214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6189211IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5191212IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDTKRHDKHL RSDTITTSEN SEVNKLSSVG ETENSGNLEF SSPGKALEKK EEQSHGECTI  60
VESRKCLKDK ETEDQELTVG DKDVEALRKM LPKNFGCLNY NKVPLCNSEV LDAKATNGSS  120
VTLEDSDIGS KNHSFGRSNT MNPERESKQT DMKLENEENQ MASRSAASKK RSRSLSPVAD  180
VNGEEKHPAA AICDFYAKGW CIKGSSCSFL HVKKNAYGSD QHSEERAGAA YLKKQAQPNE  240
GLQYSADVLK SPVFHHPPNS SLLKDSSLSL KFGLSSGRTL PRDFSKSQGW DGLHEKNKNL  300
LHQREDSPLS ALPDCQKLPS TSFGASFLLS RGVSASRQGF PPEFGLSSDG FTKLGVMEEP  360
ANVASPRLLD DHLSPVLRTS LNSNTTLPRG GILSSRFTTS NTSSFPFTSS SNASLLGAHH  420
VSTLASSLMR SSPFSASGSD NSLTNASVNS SEYKMKYSSD DWEPSIPFRP SFFIPSITTA  480
SQYDPFLDSI EVPRIVGGSY NVSLDRQGHE GASPLSTLRR ASGNFMVPGS SKTEFNDDTS  540
SLSSHNKAED KNEKIGHLQG KDPLLLEAEI RGSFGIDGRN GSRTREDDHM GITREKNVTK  600
KKDGELKLPN ISLHEKDSEA DSDRQLGDMD GKHLMDGNVP KESKATRHFR SALIELVKEI  660
LKPKWREGHL KKDVHNTVVK KTLDKVLGAL QSHQVPTTVE SVKQYLSSSR PKIEKLVEVG  720
IFIRKMSLL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439820.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_008439821.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_008439822.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A1S3AZ880.0A0A1S3AZ88_CUCME; protein FRIGIDA-ESSENTIAL 1 isoform X1
STRINGXP_008439820.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-24C3H family protein