PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009572
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 383aa    MW: 42126.7 Da    PI: 8.4241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009572genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-112349127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C+++ rtG C++G++C+F+H+p
  Cla009572 23 PGEPDCSYYIRTGLCRFGATCRFNHPP 49
               5789*********************97 PP
2zf-CCCH30.65.7e-1085104827
                GGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                ++++tGtCk+G++CkF+H++
  Cla009572  85 YYLKTGTCKFGATCKFHHPR 104
                8*****************96 PP
3zf-CCCH36.39.3e-12126150327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                + +C +++rtG+Ck+G++CkF+H++
  Cla009572 126 ETECAYYLRTGQCKFGNTCKFHHPQ 150
                568********************97 PP
4zf-CCCH38.12.5e-12244270127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+f+++tG Ck+G+ C+F+H++
  Cla009572 244 PGQPECQFYMKTGDCKFGAVCRFHHPR 270
                5789*********************96 PP
5zf-CCCH40.45e-13290316127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC f++r+G+Ck+G++CkF H++
  Cla009572 290 PGEPLCIFYSRYGICKFGPSCKFDHPM 316
                589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-52249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5872250IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-82449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-52750IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-42848IPR000571Zinc finger, CCCH-type
SMARTSM003560.7781104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-584106IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-785104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.49385105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-485104IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5123150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103123151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6125151IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9126150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4129149IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596243271IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-9245270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5247272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4249271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709289317IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7289316IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5292316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4294314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
DALWQMNLGS GEIMGSGSYP VRPGEPDCSY YIRTGLCRFG ATCRFNHPPN RELAIATARM  60
KGEFPERIGQ PECQARIYFI IFTYYYLKTG TCKFGATCKF HHPRDKAGIA GRVALNILGY  120
PLRPSETECA YYLRTGQCKF GNTCKFHHPQ PTNMMVSLRG SPIYPTVQSP TPGQQSYPGG  180
STNWSRASFI PSPRWQGPSS YASLILPQGV LSVPGWNAFN DQLGSVSSSE SPQQTRENVF  240
PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERVLPAPDCV LSPIGLPLRP GEPLCIFYSR  300
YGICKFGPSC KFDHPMGIFT YNLSAASSAN APVQHLFGTS SGTTALNLSS EGLGEAGSAK  360
PRRLSISETR EIPSDDENIN TEG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818081e-144LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132561e-144LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899804.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4DUZ30.0A0A1S4DUZ3_CUCME; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_004142565.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-173zinc finger protein 1