PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009557
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 647aa    MW: 70986.5 Da    PI: 4.5454
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009557genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32161217259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g Hnh 
  Cla009557 161 EDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCQVKKKVERSL-DGQITEIIYKGAHNHA 217
                7****************************************.***************6 PP
2WRKY103.89.5e-33387444259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k+v++tYeg+Hnhe
  Cla009557 387 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKCVITTYEGKHNHE 444
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.02155219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-28158219IPR003657WRKY domain
SuperFamilySSF1182901.12E-25158219IPR003657WRKY domain
SMARTSM007747.4E-36160218IPR003657WRKY domain
PfamPF031064.0E-25161216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-35371446IPR003657WRKY domain
SuperFamilySSF1182906.41E-28379446IPR003657WRKY domain
PROSITE profilePS5081137.7381446IPR003657WRKY domain
SMARTSM007742.6E-37386445IPR003657WRKY domain
PfamPF031061.7E-24387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MVEENGDVPL VMEEASGDEA SQEESFDITV IAVSEISELG DIIEESIDII DIPGTVEEAD  60
IDHKAFESDK TLMDFEFLPD FPKEASVLKY EIAPTADNSC FDGKIANGNC ENMESCLSSI  120
TTNQPCIPEE STKGDDIETQ HPLEDEQKGS YIPMGMLRTS EDGYNWRKYG QKQVKGSEYP  180
RSYYKCTHSN CQVKKKVERS LDGQITEIIY KGAHNHARPD PNRRAMLGSM PTPGDTPEIG  240
EGGGNRSKLE AGLAWRNTQY GMKDIKLISD CSVVDGLERT SSVSVVTELA YPLLNPQGKT  300
VGVLESVGTP ELSSTLASHD DDDGGGGDDD DLTTQGSISV CTEADDAEPE LKRRRKEGSS  360
IETNLASRSV REPRVVVQIE TEVDILEDGY RWRKYGQKVV KGNPNPRSYY KCTSAGCLVR  420
KHVERASHDL KCVITTYEGK HNHEVPAARN SGQVNSSNGN AQPSASHVQP NMGLSRNSNV  480
PKSETQIQDL AAQFYPKPEF NHDYQRSGCF DTFTNDIKLG APSFCQMKFP PLRNTLPYSS  540
FGLNSKHTGT SMSGSLASVV PDFPISLPLN QNLSAAGYDF TNGRPIPPFQ VFLAGQQLRD  600
TDRFLTPKQE HDDDNICASF QPVVDSSSGS SSSSVSSVYQ QIMGNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33161447878Probable WRKY transcription factor 4
2lex_A3e-33161447878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443695.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_016899795.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_016899796.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_016899797.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
TrEMBLA0A2D2AIT00.0A0A2D2AIT0_CITLA; SUSIWM1
STRINGXP_008443695.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-81WRKY DNA-binding protein 2