PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008633 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 203aa MW: 23631.5 Da PI: 9.8977 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.8 | 1.6e-43 | 16 | 147 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk 95 pGfrF Pt+eelv++yL++++eg++ ++++vi+ vdiy +eP +L + +++ ++++w+fF+k+++++a+g r+nr+t+ sgyWkatg+ v+s+ Cla008633 16 LPGFRFFPTEEELVSFYLHNQLEGRRKDIHRVIPVVDIYAIEPFNLSRysgeRCRRDNEQWFFFVKQQEREARGGRANRTTSsgSGYWKATGSPAYVYSS 115 69***************************99***************8445666666888********************8876689************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++++g+kkt+vfy+g+ap+g+kt+W m+ey+ Cla008633 116 HNKVIGVKKTMVFYRGKAPTGNKTKWKMNEYK 147 *******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-44 | 14 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.659 | 15 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-22 | 17 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEEYQVIGND IEDEILPGFR FFPTEEELVS FYLHNQLEGR RKDIHRVIPV VDIYAIEPFN 60 LSRYSGERCR RDNEQWFFFV KQQEREARGG RANRTTSSGS GYWKATGSPA YVYSSHNKVI 120 GVKKTMVFYR GKAPTGNKTK WKMNEYKAIQ DHIPPHSHSP SSSTPTPQLR HEFSLCRVYV 180 VSGSFRAFDR RPLQAHNSST HIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-27 | 17 | 179 | 22 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-27 | 17 | 179 | 22 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-27 | 17 | 179 | 22 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-27 | 17 | 179 | 22 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-27 | 17 | 179 | 22 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-27 | 17 | 179 | 22 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-27 | 17 | 179 | 22 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-27 | 17 | 179 | 22 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 7e-80 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 7e-80 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449583.1 | 1e-122 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 9e-81 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1S3BMD5 | 1e-121 | A0A1S3BMD5_CUCME; NAC domain-containing protein 90 | ||||
STRING | XP_008449583.1 | 1e-122 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-81 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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