PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008629 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38506.5 Da PI: 6.1906 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.7 | 4.7e-49 | 17 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 + pGfrF+P+deel+ +yLkkk+eg++ ++ +vi+e++i+k+ePwdLp k+ ++e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s ++e Cla008629 17 MFPGFRFSPKDEELILFYLKKKLEGSDDSV-DVISEIEICKFEPWDLPgKSRIHSENEWFFFSPRGRKYPNGTQNKRATELGYWKATGKERNVKS-GSEI 114 579************************999.99***************543334678**************************************.9*** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+k+tLvf+ grap+ge+t+W+mhey l Cla008629 115 IGTKRTLVFHLGRAPTGERTEWIMHEYCL 143 ***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-55 | 9 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.959 | 17 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-25 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGGVSREAEM SMAALSMFPG FRFSPKDEEL ILFYLKKKLE GSDDSVDVIS EIEICKFEPW 60 DLPGKSRIHS ENEWFFFSPR GRKYPNGTQN KRATELGYWK ATGKERNVKS GSEIIGTKRT 120 LVFHLGRAPT GERTEWIMHE YCLNDKSQDS NSMVVCRLRK NNDFRRNNPD KAASSKVQVS 180 GEDGDGGVGE KVGGESDRFS KNCSSSFDSH SLEQIDSAIE SNHKQTADPA LHEPLSREKG 240 NGGDEELYAD LLKDDIITLD DNLLCATHNP TSIIMNFSES EKYTQLPIQT AMPEVKMLSC 300 QSNATNRVKL KKQEPNIKLM NIVVLTFLFV IFVACLRVVW W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-45 | 12 | 162 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-45 | 12 | 162 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-45 | 12 | 162 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-45 | 12 | 162 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-45 | 12 | 162 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 12 | 162 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 12 | 162 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 12 | 162 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 12 | 162 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 12 | 162 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 12 | 162 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 12 | 162 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-45 | 12 | 162 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-45 | 12 | 162 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 1e-91 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 1e-91 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023512161.1 | 0.0 | NAC domain-containing protein 40 | ||||
Swissprot | Q9XIN7 | 6e-89 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | A0A0A0KGX0 | 0.0 | A0A0A0KGX0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170400.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7315 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 3e-84 | NTM1-like 8 |
Publications ? help Back to Top | |||
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