PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008619
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 695aa    MW: 76436.9 Da    PI: 7.6452
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008619genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-093974341954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Cla008619 397 FEHflHPYPKDSDKIILAKQTGLTRSQVSNWFINARVR 434
                554459******************************88 PP
2BELL112.22.8e-36259330172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +rq+lq+kkakL+ +l+eV+++Y+qy++q+q v+s Fe++aglgsak+Y+slAl +iS++FrcLkdai+ qi
  Cla008619 259 QRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQI 330
                699********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-61182328IPR006563POX domain
PfamPF075263.4E-46187326IPR006563POX domain
PROSITE profilePS5007111.888375438IPR001356Homeobox domain
SMARTSM003892.2E-9378442IPR001356Homeobox domain
CDDcd000862.26E-12378439No hitNo description
SuperFamilySSF466899.84E-17379444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28381444IPR009057Homeodomain-like
PfamPF059201.4E-17395434IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MATYFHGGSE IQANSDGIHT LYLMNPNYVP YSDTHSQTPP NMLFLNSSST HALNPSTLPH  60
APPSNNHFVG IPLPTTDNPR PSYHEISTLH PMPPHRLHYN LWAPMDQQPD HGISGDSADL  120
TFRRPTTQQG LSLSLSSQQS LYRTLSAEQE IQGGGGGAPS GEEIRVSGNS PTSVSVVSSG  180
ITGVQSVILG SKYLKAAQEL LDEVVHVGKG NFKSDKGDGT KDKMKMKKES MATIGGDPSA  240
SVGGGESTSK PVAELSTAQR QDLQMKKAKL IGMLDEVEQK YRQYHQQMQG VVSCFEQAAG  300
LGSAKSYASL ALETISKQFR CLKDAICAQI KATGKSLGEE ENWLGSKIEG SSRLRYVDHH  360
LRQQRALQQL GMIQHNTWRP QRGLPERAVS VLRAWLFEHF LHPYPKDSDK IILAKQTGLT  420
RSQVSNWFIN ARVRLWKPMV EEMYLEEIKE QEQNGDSQDM IRGGDHHHHH HQSNNNNNNS  480
NNDPQYSKTE NLMNNNNNPS HSSISSSSML GIGSTTGGFN LVRPSSDNNI LSSPKKPRTT  540
TSNSTATINN NNLPETPSSK SMLLRDNIVH DHHRGSFGNS NTYPVGEIGS TFNSELLTPR  600
FHANGVSLTL ALPHNSNSDH LSLSANQPNY HHLSSNPNLH LGRSRLDITN NHHPGPPNFS  660
DVNPAAPPPP HSAYDHVEMQ TTKRFAAQLL PDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15384442563Homeobox protein Meis2
3k2a_B1e-15384442563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657593.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A0A0KEF70.0A0A0A0KEF7_CUCSA; Uncharacterized protein
STRINGXP_004156066.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-93BEL1-like homeodomain 1