PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008610

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

YABBY

Protein Properties

Length: 170aa MW: 18743.2 Da PI: 8.9262

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008610	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	209.5	1.2e-64	6	156	5	160
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 +se+vCyv+CnfCntilavsvP +s+f++vtvrCGhC++llsvn+ + q+++ ++ ++ k+++++ ++++ +s ++++s+ t++ s l ++ Cla008610 6 MASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDS-QQGHKQQQVNAGDSSKDRASSSSSSSSSKCTKIGS--L-DS 101 689*************************************************9997.33333333333333333333333333333333333..3.34 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 +++ r+pp irPPekrqrvPsaynrfikeeiqrika+nPdishreafs+aakn Cla008610 102 AERDQHRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNM 156 4555666677.9****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-66	7	156	IPR006780	YABBY protein
SuperFamily	SSF47095	8.64E-7	111	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.5E-4	120	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSLDMMASER VCYVHCNFCN TILAVSVPCN SMFTLVTVRC GHCSNLLSVN MGASLQVVPP 60 QDSQQGHKQQ QVNAGDSSKD RASSSSSSSS SKCTKIGSLD SAERDQHRIP PIRPPEKRQR 120 VPSAYNRFIK EEIQRIKAKN PDISHREAFS TAAKNMDTNS SLLQSITDRV

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	1e-50	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	1e-50	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022986989.1	7e-96	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	1e-58	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S4DXR9	3e-93	A0A1S4DXR9_CUCME; putative axial regulator YABBY 2
STRING	XP_008449608.1	4e-94	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-58	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]