PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008443
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 890aa    MW: 98914.9 Da    PI: 7.857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008443genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-08296317426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+ffa+ GtC+ G +CkF+H 
  Cla008443 296 VICKFFAA-GTCRNGKNCKFSHH 317
                58**9999.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.7E-8170197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5170198IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4171197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028171198IPR000571Zinc finger, CCCH-type
SMARTSM003560.61230256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309292319IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6294317IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5296317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4297317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MSGSGRKRSS KWDLREDSHF ETDSVQEHSW PGKESRPGWV SPELASDDGP KWSGMGTTNT  60
ISKPKQDWGL QLEEPLPGTG ASHKEDYTNK GYNKNMEGTV EWEADDKSYG TRMSPGLDGW  120
RRHSSNLSDR NDWSRGRSRS RSWSRSRSRS RSPHSFKRDS GFHDRNRNRS RVSTQLCRDF  180
ASGRCRRGNG CQFLHQDNQN LDDSWENRNR KGARSLRSTP HDFRDYPRSG RSAAQCTDFV  240
KGRCHRGASC KYPHDSAFHE LSRGSPNDIS RDRDNDRSKE AYFSRGEREP CSSSLVICKF  300
FAAGTCRNGK NCKFSHHSQP RASPERKSSS DRWEQVQCSD GRDRLWDGTK SSELASGSDF  360
TQLREDKSEQ IASQEPSYTW PSEQKWVHGS NNESKTQWDQ AVGIKAVQSN KNDTILSKAE  420
DAGGCIGTSD PRGHRKWPSD DMEMSPDWHY PVQPSNHVVK GDCNIMSDSG SKTSMALATL  480
SHAIVQEALA KKQDIAIEPI SVDNTHFRQS HNLTKDVTIA PAFNDKITID KTIVSHAEGN  540
PSSNIVLGQR MAYHTDHPGR TVVNPKVSDG NLRVKQQDED GSMPGVNSGT TITPNIVTSE  600
QITQLTNLSV SLAQYFGNVQ PLPQLYASLN THSVSETPSF PYSDASMGAL GLSMKSGSSG  660
PVIESSKQQD STLCNSLELK KLEVTRTPSD CLLNSGGQKN ATEVKDEVHI PNLPLSSDPC  720
DKIGISAKET LHRSDAINDG KPAADGEAIR EKNGDGDNEN KTDPEDSQEN DTAENANGND  780
GVHDKKKSKD AKGIRAFKFA LVEFIKELLK PTWKEGHISK DVYKTIVKKV VDKVTGTLQG  840
GHIPQTQEKI DHYLSFSKPK LTKLVQVTTN FFSIEFSLSF PPILYSALDS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657759.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A0A0KF740.0A0A0A0KF74_CUCSA; Uncharacterized protein
STRINGXP_004148674.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-08C3H family protein