PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008278
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 266aa    MW: 30033.8 Da    PI: 5.8181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008278genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-162269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W+  a+  g++Rt+k+c++rw++yl
        Cla008278 22 RGPWTIEEDTLLIHYIAGHGEGQWNILAKQAGLKRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding49.59.8e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ +lG++ W++Ia+ ++ gRt++++k++w++
        Cla008278  75 RGNLTLQEQLLILELHSKLGNR-WSKIAQQLP-GRTDNEIKNYWRT 118
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-221672IPR009057Homeodomain-like
PROSITE profilePS5129424.0461773IPR017930Myb domain
SuperFamilySSF466894.87E-3020116IPR009057Homeodomain-like
SMARTSM007177.2E-132171IPR001005SANT/Myb domain
PfamPF002492.3E-152269IPR001005SANT/Myb domain
CDDcd001678.88E-102469No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2273124IPR009057Homeodomain-like
SMARTSM007178.8E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129419.47274124IPR017930Myb domain
PfamPF002492.0E-1475118IPR001005SANT/Myb domain
CDDcd001676.40E-790118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MANVSKSENY NKPSEEESEL RRGPWTIEED TLLIHYIAGH GEGQWNILAK QAGLKRTGKS  60
CRLRWLNYLK PDVKRGNLTL QEQLLILELH SKLGNRWSKI AQQLPGRTDN EIKNYWRTKV  120
QKQLRHLKVE ANSSRVLDAI HDLSVLEAMD QSSNPSLNFP PSSLHNTTLP NTSETAILPF  180
NDNRGGSPLP PPSSANQWPE ISECPPNSCG EFVEAWSFNM LQKQEPVCAL GAWEVADCDA  240
HMAAPDWLLE DAMVGNLWSL EDHHLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27191244108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819261e-57LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132661e-57LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151034.21e-145PREDICTED: myb-related protein 305-like
SwissprotQ9C9G71e-66MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1S3C7181e-143A0A1S3C718_CUCME; myb-related protein 305-like
STRINGXP_004169379.11e-144(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2458633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-58myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]