PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008104
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 584aa    MW: 63832.8 Da    PI: 7.9782
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008104genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33237294260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Cla008104 237 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 294
                8****************************************.***************85 PP
2WRKY105.52.8e-33411469159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  Cla008104 411 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 469
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-29227295IPR003657WRKY domain
SuperFamilySSF1182902.35E-25235295IPR003657WRKY domain
SMARTSM007748.6E-37236294IPR003657WRKY domain
PfamPF031061.5E-25237293IPR003657WRKY domain
PROSITE profilePS5081123.824237295IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37396471IPR003657WRKY domain
SuperFamilySSF1182902.48E-29403471IPR003657WRKY domain
PROSITE profilePS5081138.377406471IPR003657WRKY domain
SMARTSM007743.1E-39411470IPR003657WRKY domain
PfamPF031069.5E-26412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MASSSGSLDT SANSHPSFTF STHPFMTSSY SDLLASGNNH PPSSAAPHAD LRGSGTGVPK  60
FKSLPPPSLP LSPPPLSPSS FFAIPPGLSP AELLDSPVLL SASHVLPSPT TGSFPSQSLN  120
WKSNSGYNQQ SIKEENKYLS NFSFQTQSSK LPPTSFQPSS TTAPTTQGWT FQEQRKKEDG  180
FSSEKNMVKP EFGSMRSFSP EYGVVQNQNQ TNGSGELQSD YGNNYPQQSQ TVNRRSDDGY  240
NWRKYGQKQV KGSENPRSYY KCTFPNCPTK KKVERSLDGQ ITEIVYKGSH NHPKPQSTRR  300
SSLSSAGSSH TMVASNQATS EMADQSFTTQ GSGQFDGVAT PENSSISIGD DDFDRSSQKS  360
KSGGDDFDED EPEAKRWRRE GDNNEGISAV GSRTVREPRV VVQTTSDIDI LDDGYRWRKY  420
GQKVVKGNPN PRSYYKCTNP GCPVRKHVER ASHDLRAVIT TYEGKHNHDV PPARGSGSHS  480
LSRPFPNNEA PATAIRPSAL THQSNNGGHL QGLRLQQSSD SQAAFTVEMV QNGNGFSFPE  540
FGNSMGMGMG MGSYINQTQP SDNLFTRAKE EPRDHDMFIQ SLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37237471877Probable WRKY transcription factor 4
2lex_A6e-37237471877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0308790.0HM030879.1 Citrullus lanatus subsp. vulgaris WRKY1-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457300.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ6B6R41e-141WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1C9T8F10.0A0A1C9T8F1_BENHI; WRKY transcription factor 1
STRINGXP_008457300.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-115WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]