PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007982

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 467aa MW: 51576.8 Da PI: 6.1965

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007982	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.9e-10	180	221	3	44
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 + k rr+++NReAAr+sR+RKka++++Le+ + L + ++ Cla007982 180 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQE 221 56889************************9765555444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.0E-8	174	227	No hit	No description
SMART	SM00338	2.5E-5	178	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.484	180	224	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-7	181	221	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	182	225	No hit	No description
PROSITE pattern	PS00036	0	185	200	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.8E-30	266	339	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MQSFENPEQF YAHSSSSSSI FLRGDDSGRF HTRFLPDIEE LQQSAAAIAA FHQDDAVDLS 60 PSSVFSLKST HNTAFPIYLP YGNTDVGSIG RTGYLDTGQE LMRLKRLAPP QSVAVTVAAS 120 SSLGNGSFEN WGESAMADNS QQTDTSTDID TDERNQFQGA AHGALMAVDS MDQSKPKSAD 180 QKTLRRLAQN REAARKSRLR KKAYVQQLEN SRQRLAQLEQ ELHRARQQGI FVASGAGDHC 240 ASMAGNGALA FDLDYARWLD EHQRLINDLR ASANSQLGDD ELRFLVDGVM AHYDELFKLK 300 SVGAKADVFH ILSGMWKTPA ERCFMWLGGF RSSELLKIVG SHLEPLTDQQ LMGICNLQQS 360 SQQAEDALSQ GIEALQQSLV ETLSTASLGP ASSGNVADYM GQMAIAMSKL TTLENFLHQA 420 DLLRQQTLQQ MHRILTTRQA ARALLVISDY ISRLRALSSL WLARPRD

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MQSFENPEQF YAHSSSSSSI FLRGDDSGRF HTRFLPDIEE LQQSAAAIAA FHQDDAVDLS  60
PSSVFSLKST HNTAFPIYLP YGNTDVGSIG RTGYLDTGQE LMRLKRLAPP QSVAVTVAAS  120
SSLGNGSFEN WGESAMADNS QQTDTSTDID TDERNQFQGA AHGALMAVDS MDQSKPKSAD  180
QKTLRRLAQN REAARKSRLR KKAYVQQLEN SRQRLAQLEQ ELHRARQQGI FVASGAGDHC  240
ASMAGNGALA FDLDYARWLD EHQRLINDLR ASANSQLGDD ELRFLVDGVM AHYDELFKLK  300
SVGAKADVFH ILSGMWKTPA ERCFMWLGGF RSSELLKIVG SHLEPLTDQQ LMGICNLQQS  360
SQQAEDALSQ GIEALQQSLV ETLSTASLGP ASSGNVADYM GQMAIAMSKL TTLENFLHQA  420
DLLRQQTLQQ MHRILTTRQA ARALLVISDY ISRLRALSSL WLARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681817	1e-110	LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBank	LN713257	1e-110	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008445646.1	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X2
Swissprot	Q9SX27	1e-174	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A1S3BDX1	0.0	A0A1S3BDX1_CUCME; transcription factor HBP-1b(C38) isoform X2
STRING	XP_008445645.1	0.0	(Cucumis melo)
STRING	XP_004150536.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-158	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]