PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007961
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 354aa    MW: 40514.7 Da    PI: 5.9308
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007961genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.8e-12186211126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd CkF+H+
  Cla007961 186 YQPDICKDYKETGYCGYGDACKFMHD 211
                66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-9184216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7185212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-12186216IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.6E-10248292IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.78E-10262294No hitNo description
CDDcd001621.57E-5263289No hitNo description
SMARTSM001840.0019263299IPR001841Zinc finger, RING-type
PROSITE profilePS500899.17263299IPR001841Zinc finger, RING-type
PfamPF000972.2E-5263292IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180278287IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MADTGENQPP EQVCSFFRKP TKNKNIRKRT VDEDEEDDSK TETSLLQNQK KAPKTESKLY  60
FSSGPSKSSL SNESNVEPDK PIFQFESSKE IQVHHDSRAT ATLETETDFS RDARAIRERV  120
LKQAEEALKG KGKSSGSEKL YKGVNAYVDY KAGFRREHTI SSEKAGGAHG PLRASAHIRA  180
SARFDYQPDI CKDYKETGYC GYGDACKFMH DRGDYKSGWQ LEKEWEEVEK ARKRKLAMKS  240
DDGDEDTSEP SDEDEEDALP FACFICREPF VDPVVTKCKH YFCEHCALKV VALSWSYLCL  300
NYLGVFNMVI MKSFLFWEIE ICFRIQALSL CSLKLTYNSM FSIVISQLMM FFEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-5196307113308RING finger protein 113A
5z58_M1e-5196307113308RING finger protein 113A
6ff4_t1e-5196307113308RING finger protein 113A
6ff7_t1e-5196307113308RING finger protein 113A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818160.0LN681816.1 Cucumis melo genomic scaffold, anchoredscaffold01598.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022958735.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_022971769.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-147C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S3CS030.0A0A1S3CS03_CUCME; zinc finger CCCH domain-containing protein 1
STRINGXP_008466746.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-141C3H family protein