PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007867
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 340aa    MW: 38214.4 Da    PI: 7.0312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007867genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14174220455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f+ Lr+++P+       +++Ka+ L  Av YI++Lq
  Cla007867 174 THVEAERQRREKLNHRFSSLRSVVPNV-----SRMDKASLLSDAVSYINELQ 220
                89************************6.....4******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-1287160IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.01E-17170229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.358170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17173230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-13173220No hitNo description
PfamPF000104.1E-12174220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEQQPISPIP SSSSFSFSSS LIESKLHSLF LNQQLHNWAF AIFWNLTITP HSSHPSLTWA  60
HSHFQPHPLL SPSAAHSLYS SRHFPFSDND PLCTAISSGA VAWLNHPTLF QQTHRGKQLH  120
QTFGIKTLVC IPIPNGILEL GSPDFIPHDS QLVERISAEF GFNLKKLENN NPSTHVEAER  180
QRREKLNHRF SSLRSVVPNV SRMDKASLLS DAVSYINELQ LKISEMESRV VKKKGVEEME  240
EEEEATSRDR REKVIEIDVK IIGGDQAVIR VQTKNVSYAV AKLMEALRDL ELKVQHASMS  300
NLQDLTLQDL VVGIPCGHGY SSDEGIKQAL LNILHNNRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-20172242677Transcription factor MYC2
5gnj_B3e-20172242677Transcription factor MYC2
5gnj_E3e-20172242677Transcription factor MYC2
5gnj_F3e-20172242677Transcription factor MYC2
5gnj_G3e-20172242677Transcription factor MYC2
5gnj_I3e-20172242677Transcription factor MYC2
5gnj_M3e-20172242677Transcription factor MYC2
5gnj_N3e-20172242677Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441948.11e-160PREDICTED: transcription factor MYC3-like
TrEMBLA0A1S3B4K71e-158A0A1S3B4K7_CUCME; transcription factor MYC3-like
STRINGXP_008441948.11e-159(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2457733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-43bHLH family protein