PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007645
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 286aa    MW: 30937.5 Da    PI: 6.6428
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007645genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18209243135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Cla007645 209 CLHCGAEKTPQWRAGPYGPKTLCNACGVRYKSGRL 243
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.3E-17203253IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.11203239IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-15205267No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14207241IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.86E-14208256No hitNo description
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
PfamPF003203.7E-16209243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESSLAFMDD LLDFSSDIGE EDEEDDVVPP FSVKPKSSST APADSSELNA GTHPDDSSSC  60
RVLPEEDYGE EELEWLSNED AFPAVETFVD ILSDHHDHAP PPPPLTSVSK QNSPVSVLES  120
TSISSHGETN NGGNKTSVHG SSILMSCCGG LKVPSKARSK RRRGRHISGH HLWFKQQPSS  180
KNVKQVVPTT VTTASVAAVT GTAAIGRKCL HCGAEKTPQW RAGPYGPKTL CNACGVRYKS  240
GRLVPEYRPA SSPTFSAELH SNSHRKVMEM RRQKQLGMVV NPMDKG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818440.0LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023006312.11e-162GATA transcription factor 1-like isoform X2
SwissprotQ8LAU98e-64GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A0A0LKH91e-155A0A0A0LKH9_CUCSA; Uncharacterized protein
STRINGXP_004164489.11e-156(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-56GATA transcription factor 1