PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007520

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

CPP

Protein Properties

Length: 599aa MW: 65298.2 Da PI: 7.2644

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007520	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.6	1.8e-16	304	341	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk Cla007520 304 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQGCFNKP 341 89**********************************96 PP
2	TCR	51.6	1.9e-16	388	426	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN Cla007520 388 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 426 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.4E-18	302	343	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.882	303	428	IPR005172	CRC domain
Pfam	PF03638	8.7E-12	305	340	IPR005172	CRC domain
SMART	SM01114	7.5E-18	388	429	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.5E-12	390	426	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MDSTPHNKPT KLPPLSKFED SPVFNFINSL SPIKPVKSIH ITQTFNSISF XXXSLPFQFS 60 LPHHITLVLS TPQKVSKNEG AVIIMDQLLE IFVPQIPPPA DGSTPAIQPP ETVNADAGQV 120 RIFRCPISSE AMEEAIHGGE DEGLLQNDGV LDRIEENKPL CNLQSGNMRR RCLDFEMAGK 180 PNTAAAAVEA TADASIPGSS SSSSSSSSSF RRTLPGIGLH LNALAATLKH SDSENLCSER 240 QPSLPSSSAP IFAPNSTRDQ PLLASSTPES ENPQEPANLT GEELNQINPK KNWKLMENAG 300 IGACKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCQGCFNK PIHEAVVLET RRQIESRNPL 360 AFAPKVIVNC DSVSELGEDS NKTPASARHK RGCNCKKSGC LKKYCECYQG GVGCSINCRC 420 EGCKNAFGRK DESSLIGIET EQEEEAREHC QKNAEVQSDE DNQNPSNAAP STPLGPCRSL 480 IPFPFQLKRR LPSFLNDESS SRLSVRFKLE KHSITQTEPK FEKTPCEDVM PETLCNSCPS 540 STGVKSVSPN SKRVTLPPPQ GDFRPLPSTR IGRKLILQSI PSFPSLTNQN SRMNGPSEL

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MDSTPHNKPT KLPPLSKFED SPVFNFINSL SPIKPVKSIH ITQTFNSISF XXXSLPFQFS  60
LPHHITLVLS TPQKVSKNEG AVIIMDQLLE IFVPQIPPPA DGSTPAIQPP ETVNADAGQV  120
RIFRCPISSE AMEEAIHGGE DEGLLQNDGV LDRIEENKPL CNLQSGNMRR RCLDFEMAGK  180
PNTAAAAVEA TADASIPGSS SSSSSSSSSF RRTLPGIGLH LNALAATLKH SDSENLCSER  240
QPSLPSSSAP IFAPNSTRDQ PLLASSTPES ENPQEPANLT GEELNQINPK KNWKLMENAG  300
IGACKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCQGCFNK PIHEAVVLET RRQIESRNPL  360
AFAPKVIVNC DSVSELGEDS NKTPASARHK RGCNCKKSGC LKKYCECYQG GVGCSINCRC  420
EGCKNAFGRK DESSLIGIET EQEEEAREHC QKNAEVQSDE DNQNPSNAAP STPLGPCRSL  480
IPFPFQLKRR LPSFLNDESS SRLSVRFKLE KHSITQTEPK FEKTPCEDVM PETLCNSCPS  540
STGVKSVSPN SKRVTLPPPQ GDFRPLPSTR IGRKLILQSI PSFPSLTNQN SRMNGPSEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	9e-17	307	425	14	120	Protein lin-54 homolog
5fd3_B	9e-17	307	425	14	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	1e-156	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	1e-156	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449927.1	0.0	PREDICTED: CRC domain-containing protein TSO1, partial
Swissprot	Q9LUI3	1e-122	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A1S3BP37	0.0	A0A1S3BP37_CUCME; CRC domain-containing protein TSO1
STRING	XP_008449927.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24563	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-120	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]