PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007307
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 285aa    MW: 31505.1 Da    PI: 6.8376
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007307genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.58.3e-21119181259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                +D+y WrKYGqK++ ++++prsY+rCt++   gC+++k+v+r +  + + + +itY  +H+++
  Cla007307 119 EDKYGWRKYGQKVILNATYPRSYFRCTHKydqGCRATKHVQRMEgmDSEIMYKITYICDHTCS 181
                7***************************99999*********97323455789*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-22105182IPR003657WRKY domain
PROSITE profilePS5081117.086113160IPR003657WRKY domain
SuperFamilySSF1182902.22E-20115182IPR003657WRKY domain
SMARTSM007744.3E-28118182IPR003657WRKY domain
PfamPF031061.2E-20119180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEPADFSHAG IPAETRRKIT AKLLSGRQSA ARLQSLLQSA AAADHDPLAL ATKILTSFNE  60
SISILESAAA ELSCPDHSLC SDLDSGDSRG STAVKNHQGR ANKRRRLMNT RVVMTATTED  120
KYGWRKYGQK VILNATYPRS YFRCTHKYDQ GCRATKHVQR MEGMDSEIMY KITYICDHTC  180
STASQIIASA VASASDSYNL ISFSNSHNGQ LIEGTGHSFF CPNNDDAMKV RETTTTSGST  240
NHEVDLWSEL KDFGSLQTTT MTNQYYFSTG DDDADSLMFW NGCLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-17113180368OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4536700.0GQ453670.1 Citrullus lanatus WRKY70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456968.11e-122PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 70
TrEMBLC8CP450.0C8CP45_CITLA; WRKY70
STRINGXP_008456968.11e-121(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2455633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-30WRKY DNA-binding protein 70