PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007306
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 325aa    MW: 35540.9 Da    PI: 7.359
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007306genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.27.9e-29160220259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dDg++WrKYGqKe+ gs+fpr+Y+rCt++   +Cp+kk+v+r ++dp+++e+tY+g+H+++
  Cla007306 160 DDGFTWRKYGQKEILGSRFPRGYFRCTHQklyHCPAKKHVQRLDDDPHTFEVTYRGDHTCH 220
                8****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-27155221IPR003657WRKY domain
SuperFamilySSF1182902.75E-25157221IPR003657WRKY domain
SMARTSM007742.5E-37159221IPR003657WRKY domain
PfamPF031069.9E-26160220IPR003657WRKY domain
PROSITE profilePS5081121.035160222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEEAISLILR GCSLARQLEF DVLNLGSNNI NVPQPHLMAR SCDEILGVFS AAKERLSSHE  60
QWPPFTAVQR EVGLEEWLRS TCSQAMELAQ MQTRSPAPPS AVVAVPVPAA VEDSGKLIAM  120
GFSSSSSSSS TKARRRKDDT EKRTVRVAAP RIGNTELPPD DGFTWRKYGQ KEILGSRFPR  180
GYFRCTHQKL YHCPAKKHVQ RLDDDPHTFE VTYRGDHTCH MSATAPSAPP PPLPAIAGGQ  240
HISQFRPPST GWLSVEVVGS ASASASGGPA TVRYGKDVAE QFPVVDLADV MFNSGTGSSN  300
SMDSIFAAYV ADDHHHKWEK DDKKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20160219968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456967.11e-178PREDICTED: WRKY transcription factor 55
TrEMBLA0A1S3C4H91e-176A0A1S3C4H9_CUCME; WRKY transcription factor 55
STRINGXP_008456967.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-57WRKY DNA-binding protein 55