PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla007276 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23317.4 Da PI: 8.2417 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.6 | 1.6e-41 | 19 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lq+q++ l+ael+++++e Cla007276 19 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAE 118 7***********************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.728 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.8E-42 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGRRTSLQAP PGTLNTITPC AACKLLRRRC AQECPFSPYF SPHEPHKFAS VHKVFGASNV 60 SKMLMEVSEN QRADAANSLV YEANVRLRDP VYGCMGAISA LQHQIQALQA ELNAVRAEIL 120 RHKFREANNM IHSSPQQQHL PFLSSSTEVV SVAVPPPPPP PPLPPPPHHD ASSSTSSLYN 180 RPVVAVAADY STISSDENVP YFVTTSSTAH QLNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-44 | 9 | 130 | 1 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-44 | 9 | 130 | 1 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681900 | 1e-159 | LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041. | |||
GenBank | LN713264 | 1e-159 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456927.1 | 1e-121 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 2e-74 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A1S3C502 | 1e-120 | A0A1S3C502_CUCME; LOB domain-containing protein 15 | ||||
STRING | XP_008456927.1 | 1e-121 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-76 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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