PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006943
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26511.1 Da    PI: 8.9948
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006943genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.3e-31958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ 
  Cla006943  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFG 58
               79**********************************************95 PP
2K-box77.43.7e-2680161990
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                 +e++++++ qe++kLk+++e+L r++RhllGedL++Ls+keLq+Le+qLe +l + R++K++ l +  +el+ k ++  ++
  Cla006943  80 YAERQTQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKERQLGDLNRELKLKLEAEGQN 161
                57899********************************************************************998765554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.403161IPR002100Transcription factor, MADS-box
CDDcd002652.70E-44272No hitNo description
SuperFamilySSF554556.67E-34292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-32323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2082154IPR002487Transcription factor, K-box
PROSITE profilePS5129712.79185175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFGSA  60
GTTKTLERYQ RCCFSPQHNY AERQTQNWFQ EISKLKAKYE SLCRTHRHLL GEDLGPLSVK  120
ELQNLEKQLE AALAQARQRK ERQLGDLNRE LKLKLEAEGQ NLTAIQSFWS SGSGSAEHAN  180
NFPLHPLPPN PIECQHEPVL QIGYQNYFSE EGPSVQKSMT CETNFIQGWV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21169169MEF2C
5f28_B5e-21169169MEF2C
5f28_C5e-21169169MEF2C
5f28_D5e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8997061e-164KC899706.1 Cucumis sativus AGL6-like MADS-box protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656687.11e-150PREDICTED: agamous-like MADS-box protein AGL6
RefseqXP_011656689.11e-150PREDICTED: agamous-like MADS-box protein AGL6
SwissprotQ8LLR11e-127MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0A0KCU51e-147A0A0A0KCU5_CUCSA; Uncharacterized protein
STRINGXP_008460143.11e-147(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-75AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]