PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006720
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 309aa    MW: 34989.2 Da    PI: 6.8554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006720genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-121257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W  eEde l++ v+++G+++W++I ++  + Rt+k+c++rw +
        Cla006720 12 KGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVN 57
                     79*************************8887799**********87 PP
2Myb_DNA-binding43.76.4e-1468107344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++T+eE+   +d+ +q+G++ W++Ia ++  gRt++++k++w
        Cla006720  68 KFTAEEERVVIDLQAQFGNK-WAKIATYLR-GRTDNDVKNFW 107
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.463759IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-19960IPR009057Homeodomain-like
SMARTSM007174.5E-91161IPR001005SANT/Myb domain
SuperFamilySSF466891.23E-2611107IPR009057Homeodomain-like
PfamPF002491.9E-101257IPR001005SANT/Myb domain
CDDcd001671.10E-91459No hitNo description
PROSITE profilePS5129419.2160115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-1761113IPR009057Homeodomain-like
SMARTSM007178.5E-1265113IPR001005SANT/Myb domain
PfamPF002491.2E-1168107IPR001005SANT/Myb domain
CDDcd001672.55E-1068107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEERGSHEVL RKGPWKLEED EVLLNHVNRF GPRDWSSIRS KGLLQRTGKS CRLRWVNKLR  60
PNLKNGCKFT AEEERVVIDL QAQFGNKWAK IATYLRGRTD NDVKNFWSSR QKRLARLLQT  120
SIAPSKLQRS AKKEKPVDFD VPSMEAPKLS SASEGESSSR PMSCSSSCCA DNAAAVNMFC  180
SLPDLYSPKL LGFGQDFLQP EFNSFQTTIK SEPQTNYPST NFHTQPLSST FSSQGLHDPS  240
FDVFLEALDV SQLHNEVQFP FGLQFYEPIG CCSSHDVVRQ NVNNPESFFS EFPADIFDHI  300
EPLPSSPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-261011325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819251e-143LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132651e-143LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140627.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1S3CB010.0A0A1S3CB01_CUCME; myb-related protein 308-like
STRINGXP_004140627.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-68MYB family protein