PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla006623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 136aa MW: 14757.6 Da PI: 6.5023 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 56.3 | 9.3e-18 | 1 | 57 | 45 | 101 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++++pe++r da++slvyeA+ r+rdPvyG++gvi++lq+ql++l+++l+++++++ Cla006623 1 MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQI 57 57899**********************************************999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.262 | 1 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-15 | 3 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 136 aa Download sequence Send to blast |
MYDEVPESQR ADAANSLVYE ANLRLRDPVY GCMGVISALQ HQLHTLQSDL NSIRTQIFNF 60 KFTQHNNSHI PNFISAAATP PAAPPTPPHS QPPPLSLPPP LPSSSSIFSS PIITTTTAAP 120 ELINPISTTQ HISYFG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-16 | 1 | 60 | 55 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-16 | 1 | 60 | 55 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681821 | 6e-67 | LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040. | |||
GenBank | LN713257 | 6e-67 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456762.1 | 2e-37 | PREDICTED: LOB domain-containing protein 15-like | ||||
TrEMBL | A0A1S3C3L1 | 4e-36 | A0A1S3C3L1_CUCME; LOB domain-containing protein 15-like | ||||
STRING | XP_008456762.1 | 6e-37 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-26 | LOB domain-containing protein 13 |