PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla006219

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 345aa MW: 36656.2 Da PI: 8.4939

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006219	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.3	8.1e-36	84	189	3	94
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 + k++++++hTkv+gR+RR+R++a caar+F+L++eL +++d++ti WLl+ a+pai+e+tgt Cla006219 84 PTKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELDHKSDGETIRWLLEHAEPAIIEATGTgtvpaiavsvggtlkipttsparpngeiseaprkrrr 183 789************************************************************5555555555555544422222222222222222221 PP TCP 66 ..ssssaseceaesssssasnsssgkaaksa 94 s +s+ Cla006219 184 kgS-------------------------NSE 189 111.........................111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-28	89	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.545	89	143	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MEETNQNHRH NEKEGSSNGG YENKTNSIVD SSNLAKAEEI LSDPHVEPPS TAVPKKEKEG 60 IMEHGLDIMH PLSLSQVPST VAKPTKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL 120 DHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVGGTL KIPTTSPARP NGEISEAPRK 180 RRRKGSNSES NDCNDQASVS SGLTPIAPMA AYGAGLVPFW GSAGGVTEPF FMVPGTSNNH 240 QPQLWAVPAR PISNLVSSMN PGLQFGGVVP VLARAVSNGS SGLESGSSPA IVSQSLMPAT 300 ASAPATTSGS TQMLRDFSLE IYEKKELEFM GRPSPAKSQT PCSKP

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MEETNQNHRH NEKEGSSNGG YENKTNSIVD SSNLAKAEEI LSDPHVEPPS TAVPKKEKEG  60
IMEHGLDIMH PLSLSQVPST VAKPTKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL  120
DHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVGGTL KIPTTSPARP NGEISEAPRK  180
RRRKGSNSES NDCNDQASVS SGLTPIAPMA AYGAGLVPFW GSAGGVTEPF FMVPGTSNNH  240
QPQLWAVPAR PISNLVSSMN PGLQFGGVVP VLARAVSNGS SGLESGSSPA IVSQSLMPAT  300
ASAPATTSGS TQMLRDFSLE IYEKKELEFM GRPSPAKSQT PCSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	182	RKRRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00007	PBM	Transfer from 495258	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439154.1	0.0	PREDICTED: transcription factor TCP19
Swissprot	Q9LT89	9e-63	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A1S3AYR7	0.0	A0A1S3AYR7_CUCME; transcription factor TCP19
STRING	XP_008439154.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-60	TCP family protein