PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 20777.7 Da PI: 8.4966 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 189.1 | 2.1e-58 | 22 | 184 | 6 | 161 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...........lleelkveeenlksnvekeesast 94 sseq+Cyv+Cn C+t+lavsvP +slfk vtvrCG+C++ll vn+ + ll+++++++ + ++ lee +++ n + n +++++ Cla005676 22 SSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGM-LLPSSNQFHG-FAHStpnflspnthnFLEEISNSNPNPNPNFLMNQAEGI 119 79*****************************************998765.5566665433.322213454444333333333333333333333333222 PP YABBY 95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 ++ + +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaakn + Cla005676 120 ---DLTMATRVANDLPRQPPsINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNVS 184 ...2345888999999999989********************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-59 | 22 | 186 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.1E-6 | 133 | 180 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 1.46E-4 | 147 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSSSSIPNTF SQVPPPLLPP PSSEQLCYVH CNICDTVLAV SVPCSSLFKR VTVRCGYCAN 60 LLPVNMCGGM LLPSSNQFHG FAHSTPNFLS PNTHNFLEEI SNSNPNPNPN FLMNQAEGID 120 LTMATRVAND LPRQPPSINR PPEKRQRVPS AYNRFIKEEI QRIKAANPDI SHREAFSAAA 180 KNVSRYII |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 1e-35 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 1e-35 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150647.1 | 1e-107 | PREDICTED: protein YABBY 4 isoform X2 | ||||
Swissprot | A2X7Q3 | 2e-53 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 2e-53 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0A0L1N8 | 1e-105 | A0A0A0L1N8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004150647.1 | 1e-106 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-49 | YABBY family protein |
Publications ? help Back to Top | |||
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