PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla005613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 29862.8 Da PI: 6.5409 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 145 | 195 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Cla005613 145 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 195 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.46E-31 | 144 | 203 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 144 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-40 | 145 | 209 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 145 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-23 | 145 | 205 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.197 | 145 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 146 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 169 | 185 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MMYEQSNGCE SDFVLLETIR RHLLGESDAY RCGNFALAGT ASPVFCRSSS FGSLYPCLTE 60 NWGDLPLKED DSEDMVIAGV LRDAVSVGWV PSLGASPSDA FNFGFSDVKP EPEILPPVNI 120 LPEVKVAAAA AATPLPAVVP AKGKHYRGVR QRPWGKFAAE IRDPAKNGAR VWLGTFETAE 180 DAALAYDRAA YRMRGSKALL NFPLRVNSGE PDPVRVTSKR SSPRSSPEPT SSLSSVESGS 240 PKRRKKADGT AVTPALASPE LIQLVVGTSE LQVEVGVAK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-43 | 141 | 210 | 1 | 70 | ATERF1 |
3gcc_A | 1e-43 | 141 | 210 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB490000 | 0.0 | AB490000.1 Citrullus lanatus subsp. vulgaris CitERF1a mRNA for ethylene responsive transcription factor 1a, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008448804.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor 2 | ||||
Swissprot | O80337 | 3e-81 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | D1MWZ3 | 1e-176 | D1MWZ3_CITLA; Ethylene responsive transcription factor 1a | ||||
STRING | XP_008448804.1 | 1e-157 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2239 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17500.1 | 6e-64 | ethylene responsive element binding factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|