PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005253
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 332aa    MW: 36969 Da    PI: 6.2685
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005253genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13105156155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Cla005253 105 QRMTHITVERNRRKQMNEYLSILRSLMPHS---YVQRGDQASIIGGAINFVKELE 156
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-13103160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-12103160No hitNo description
PROSITE profilePS5088814.926104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17104174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-9110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALEAVVFPQ DPFVYKDLFN LESSSSSLSF IHDQDEDFYY LPNQTQNSPI LLDHHYNFNY  60
ESSQRVDSTA EEAVAGERQD GGGSGRPGRR RRGRTQKNKE ELENQRMTHI TVERNRRKQM  120
NEYLSILRSL MPHSYVQRGD QASIIGGAIN FVKELEQQVH LLSAQTNVIN NPFPSHVLPN  180
NNIISSSSFP HHFFAFPSSS PSSSSSSSSS PSSSSSLDDS SSAAVMTSNN SNNNPNTLIQ  240
SSIGDIEVSM VDSHANLKIT CKKLPKQLLK IVSGLHSLHL TVLHLNVSTT HQFVLYSFSL  300
KVEEDCGLSS VDEIANGVYQ LLCRIQEETF SI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105116RMTHITVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818063e-80LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132563e-80LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450677.11e-144PREDICTED: transcription factor bHLH94-like
TrEMBLA0A1S3BQS81e-143A0A1S3BQS8_CUCME; transcription factor bHLH94-like
STRINGXP_008450677.11e-144(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-33bHLH family protein