PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005142
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25271.4 Da    PI: 10.3743
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005142genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171150342
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               i n+s r+ tf kR+ g++KK +ELS+LC++e++ i+fs+
  Cla005142 11 IANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSP 50
               89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.661149IPR002100Transcription factor, MADS-box
CDDcd002663.88E-35285No hitNo description
SuperFamilySSF554553.01E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTRKKVKLAY IANDSARKAT FKKRKRGLMK KVSELSTLCG IEACAIVFSP YDSQPELWPS  60
PIGVQRVLSQ FKKMPEMEQS KKMVNQETFL RQRIAKANEQ LKKMRKDNRE KEITRLMFQS  120
LTATKGLHGL NMLDLNDLGW LIDQNLKDIG TRIDTLKKPP TQLQPQPPPQ PSQTQPLTAA  180
WLMELVSPQD QMGFVGDDML LPFGDQTYNP NNAMWSSAFF P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIANDSARKATFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135760.11e-141PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-66AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0A0LVS31e-140A0A0A0LVS3_CUCSA; Uncharacterized protein
STRINGXP_004163773.11e-141(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-66AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]