PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004492
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 575aa    MW: 62805.4 Da    PI: 6.5487
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004492genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31214271260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++ +i+Y+g+H+h+k
  Cla004492 214 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQIADIIYKGTHDHPK 271
                8****************************************.***************85 PP
2WRKY105.23.4e-33389447159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+v+g+++prsYY+Ct  gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Cla004492 389 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHD 447
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.33208272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-27209272IPR003657WRKY domain
SuperFamilySSF1182901.11E-24210272IPR003657WRKY domain
SMARTSM007741.5E-33213271IPR003657WRKY domain
PfamPF031065.0E-24214270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37374449IPR003657WRKY domain
SuperFamilySSF1182902.88E-29381449IPR003657WRKY domain
PROSITE profilePS5081138.549384449IPR003657WRKY domain
SMARTSM007745.3E-39389448IPR003657WRKY domain
PfamPF031069.4E-26390447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MDPTDSDLAD PSHASSSAGA KYKLMSPAKL PISRSPCITI PPGLSPTSFL DSPVLLTNLK  60
VEPSPTTGSF TKLPMAHDSS SSAIYPVTTM AFSNTNASDE GRSNYFEFKP YVGPNMVPAD  120
LSHRKCEQSS EVQVQGQPQP FTAPPMTKIE INVVSNDLSR STQMDTHPVG SGPSAPEADG  180
DDISHSLNTN SRVQAPQSDP KGSGIPVVSD RLSDDGYNWR KYGQKHVKGS EFPRSYYKCT  240
HPNCEVKKLF ERSHDGQIAD IIYKGTHDHP KPQPSRRYSA SASVNVQEDG PDKPSPLTGQ  300
DDRLFSMYAQ TVHNLEPNGT TEPSLAANDS INEGAGTTLP CKNQDEVDDD DIFSKRRKIE  360
LGGFDVCPMV KPIREPRVVV QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTNVGC  420
PVRKHVERAS HDPKAVITTY EGKHNHDVPT AKTSSHDVGG PSTIAPSRYR LEESDTISLD  480
LGVGIGTGTG GENRSNDYRQ ALHSQLVENQ TPNGNFNFEV VQENSAPTYF GVINRGINQH  540
GSRESLSESH NKEIAPLNHS SHPYPTSIGR ILTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36203449677Probable WRKY transcription factor 4
2lex_A3e-36203449677Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840170.0GU984017.1 Cucumis sativus WRKY protein (WRKY17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023005349.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S3BKL70.0A0A1S3BKL7_CUCME; probable WRKY transcription factor 20
STRINGXP_008449073.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein